Ontology:EDAM

Data for the EDAM ontology:

	HITS	EDAM
Genomics	125	Error: no local variable "conceptIdShort" was set.
RNA-Seq	50	Error: no local variable "conceptIdShort" was set.
Sequencing	41	Error: no local variable "conceptIdShort" was set.
Metagenomics	40	Error: no local variable "conceptIdShort" was set.
Transcriptomics	35	Error: no local variable "conceptIdShort" was set.
Structural variation	33	Error: no local variable "conceptIdShort" was set.
Epigenomics	29	Error: no local variable "conceptIdShort" was set.
DNA methylation	28	Error: no local variable "conceptIdShort" was set.
Copy number estimation	25	Error: no local variable "conceptIdShort" was set.
Sequence analysis	23	Error: no local variable "conceptIdShort" was set.
Phylogenetics	20	Error: no local variable "conceptIdShort" was set.
Comparative genomics	18	Error: no local variable "conceptIdShort" was set.
Mapping	13	Error: no local variable "conceptIdShort" was set.
Sequence assembly	12	Error: no local variable "conceptIdShort" was set.
Next Generation Sequencing	10	Error: no local variable "conceptIdShort" was set.
Genotyping	10	Error: no local variable "conceptIdShort" was set.
Population genetics	10	Error: no local variable "conceptIdShort" was set.
ChIP-on-chip	9	Error: no local variable "conceptIdShort" was set.
Exome and whole genome variant detection	7	Error: no local variable "conceptIdShort" was set.
Exome analysis	7	Error: no local variable "conceptIdShort" was set.
Genetic variation	7	Error: no local variable "conceptIdShort" was set.
Sequence motifs	6	Error: no local variable "conceptIdShort" was set.
Functional genomics	5	Error: no local variable "conceptIdShort" was set.
Resequencing	5	Error: no local variable "conceptIdShort" was set.
Genetics	4	Error: no local variable "conceptIdShort" was set.
Protein structure analysis	4	Error: no local variable "conceptIdShort" was set.
Regulatory genomics	4	Error: no local variable "conceptIdShort" was set.
Gene regulation	4	Error: no local variable "conceptIdShort" was set.
Cancer biology	4	Error: no local variable "conceptIdShort" was set.
Sequence alignment	3	Error: no local variable "conceptIdShort" was set.
Clone verification	3	Error: no local variable "conceptIdShort" was set.
Gene expression	3	Error: no local variable "conceptIdShort" was set.
Population Genomics	3	Error: no local variable "conceptIdShort" was set.
DNA-Seq	3	Error: no local variable "conceptIdShort" was set.
High-throughput sequencing	2	Error: no local variable "conceptIdShort" was set.
ChIP-Seq	2	Error: no local variable "conceptIdShort" was set.
SNPs	2	Error: no local variable "conceptIdShort" was set.
De-novo assembly	1	Error: no local variable "conceptIdShort" was set.
Genome Wide Association Studies	1	Error: no local variable "conceptIdShort" was set.
MeDIP-Seq	1	Error: no local variable "conceptIdShort" was set.
Viral genomics	1	Error: no local variable "conceptIdShort" was set.
In vitro selection	1	Error: no local variable "conceptIdShort" was set.
Read alignment	1	Error: no local variable "conceptIdShort" was set.
Protein interactions	1	Error: no local variable "conceptIdShort" was set.
DNA	1	Error: no local variable "conceptIdShort" was set.
Storage	1	Error: no local variable "conceptIdShort" was set.
Metabolic reconstruction	1	Error: no local variable "conceptIdShort" was set.
Metabolic pathways	1	Error: no local variable "conceptIdShort" was set.
SNP Annotation	0	Error: no local variable "conceptIdShort" was set.
De novo assembly	0	Error: no local variable "conceptIdShort" was set.
Sequence Quality Control	0	Error: no local variable "conceptIdShort" was set.
MiRNA	0	Error: no local variable "conceptIdShort" was set.
NcRNAs	0	Error: no local variable "conceptIdShort" was set.
Gene finding	0	Error: no local variable "conceptIdShort" was set.
Genotype and phenotype	0	Error: no local variable "conceptIdShort" was set.
Gene annotation retrieval	0	Error: no local variable "conceptIdShort" was set.
Structural variation discovery	0	Error: no local variable "conceptIdShort" was set.
Exome and Whole genome variant detection	0	Error: no local variable "conceptIdShort" was set.
ChIP-Seq Analysis	0	Error: no local variable "conceptIdShort" was set.
Personal genomics	0	Error: no local variable "conceptIdShort" was set.
De novo transcriptome assembly	0	Error: no local variable "conceptIdShort" was set.
Chromosome Walking	0	Error: no local variable "conceptIdShort" was set.
Targeted assembly	0	Error: no local variable "conceptIdShort" was set.
General bioinformatics (pipeline)	0	Error: no local variable "conceptIdShort" was set.
Viral metagenomics	0	Error: no local variable "conceptIdShort" was set.
Homology	0	Error: no local variable "conceptIdShort" was set.
SRNA	0	Error: no local variable "conceptIdShort" was set.
Whole Genome Resequencing Analysis	0	Error: no local variable "conceptIdShort" was set.
InDel discovery	0	Error: no local variable "conceptIdShort" was set.
RNA-Seq Quantitation	0	Error: no local variable "conceptIdShort" was set.
Regulatory element annotation	0	Error: no local variable "conceptIdShort" was set.
Comparative transcriptomics	0	Error: no local variable "conceptIdShort" was set.
Genomic Assembly	0	Error: no local variable "conceptIdShort" was set.
MiRNA-seq	0	Error: no local variable "conceptIdShort" was set.
Small RNA	0	Error: no local variable "conceptIdShort" was set.
Allele-specific transcription	0	Error: no local variable "conceptIdShort" was set.
MeDIP-seq	0	Error: no local variable "conceptIdShort" was set.
Transcription	0	Error: no local variable "conceptIdShort" was set.
Targeted resequencing	0	Error: no local variable "conceptIdShort" was set.
Regulatory genomics epigenomics	0	Error: no local variable "conceptIdShort" was set.
Mutations	0	Error: no local variable "conceptIdShort" was set.
Motif analysis	0	Error: no local variable "conceptIdShort" was set.
New gene discovery	0	Error: no local variable "conceptIdShort" was set.
SNP discovery	0	Error: no local variable "conceptIdShort" was set.
RNA-Seq Alignment	0	Error: no local variable "conceptIdShort" was set.
Transcriptomics genetics	0	Error: no local variable "conceptIdShort" was set.
Mutations and regulatory sites	0	Error: no local variable "conceptIdShort" was set.
Quality Control	0	Error: no local variable "conceptIdShort" was set.
Fusion genes	0	Error: no local variable "conceptIdShort" was set.
Pathway analysis	0	Error: no local variable "conceptIdShort" was set.
Functional Genomics	0	Error: no local variable "conceptIdShort" was set.
MiRNA-Seq	0	Error: no local variable "conceptIdShort" was set.
Gene structure and RNA splicing	0	Error: no local variable "conceptIdShort" was set.
Transcription Factor analysis	0	Error: no local variable "conceptIdShort" was set.
Yeast two-hybrid	0	Error: no local variable "conceptIdShort" was set.
Regulatory sites	0	Error: no local variable "conceptIdShort" was set.
De novo sequencing	0	Error: no local variable "conceptIdShort" was set.
Nucleosome Positioning	0	Error: no local variable "conceptIdShort" was set.
Bisulfite Sequencing	0	Error: no local variable "conceptIdShort" was set.
Differential Expression	0	Error: no local variable "conceptIdShort" was set.
Integrated solution	0	Error: no local variable "conceptIdShort" was set.
Transposable Elements	0	Error: no local variable "conceptIdShort" was set.
Systems biology	0	Error: no local variable "conceptIdShort" was set.
Ancient DNA	0	Error: no local variable "conceptIdShort" was set.
Reference assembly	0	Error: no local variable "conceptIdShort" was set.
Metatranscriptomics	0	Error: no local variable "conceptIdShort" was set.
Whole Genome Resequencing	0	Error: no local variable "conceptIdShort" was set.
Gene Expression Analysis	0	Error: no local variable "conceptIdShort" was set.
Sequence comparison	0	Error: no local variable "conceptIdShort" was set.
Motif discovery	0	Error: no local variable "conceptIdShort" was set.
Yeast one-hybrid	0	Error: no local variable "conceptIdShort" was set.
Transcription regulation	0	Error: no local variable "conceptIdShort" was set.
Transcription Factor Binding Site identification	0	Error: no local variable "conceptIdShort" was set.
Fusion transcripts	0	Error: no local variable "conceptIdShort" was set.
Somatic mutations	0	Error: no local variable "conceptIdShort" was set.
Alternative Splicing	0	Error: no local variable "conceptIdShort" was set.
Differential methylated regions identification	0	Error: no local variable "conceptIdShort" was set.
Alignment	0	Error: no local variable "conceptIdShort" was set.

	HITS	EDAM
Read mapping	119
Peak calling	31
Annotation	20
SNP calling	10
Read pre-processing	8
Scaffolding	7
Sequence motif discovery	6
Clustering	4
Viewer	3
Classification	3
Format conversion	2
Conversion	2
Mutation detection	2
Hadoop	2
Transcriptome assembly	2
Filtering	2
Assembly	1
Phase pattern prediction	1
Signal	1
Simulation	1
Graph reduction	1
Differentially expressed gene identification	1
Learning algorithm	1
Primer removal	1
Sample Barcoding	1
Statistical testing	1
Protein Binding Peak Detection	0
MiRNA profiling	0
Chromatogram viewer	0
MCMC	0
Gap extension	0
Sequencing Quality Control	0
Genomic overlaps	0
Multiple sequence alignment viewer	0
Gene ontology	0
PCR Primer Design	0
Chromatin motif finding	0
Assembly visualization	0
Smith-Waterman	0
Cost estimation	0
Genomic correlations	0
MapReduce	0
Empirical Bayes	0
LIMS	0
Signature methods	0
Visualization	0
Tilling	0
Genome Alignment	0
Localized reassembly/realignment	0
Genetic variation annotation	0
Chromatogram management	0
Expression profiling	0
MiRNA Prediction	0
Assembly QC	0
K-mer analysis	0
Bloom filters	0
Alignment	0	Error: no local variable "conceptIdShort" was set.
QC	0
Genome Indexing	0
Micro assembly	0
Methylation Calling	0
Sequence motif analysis	0
OLC	0
Read Mapping and Tag Distribution Analysis	0
Basecaller	0
Ab-inito gene prediction	0
Genome wide association studys	0
Genome browser	0
Burrows-Wheeler	0
Paired End	0
Regression.	0
Alignment Analysis	0
Basespace	0
Gene fusions discovery.	0
Trimming	0
Error correction	0
GPU	0
Variant Calling	0
Collapsing Methods	0
Colorspace	0
Profiling short tandem repeats from short reads	0
Peak detection	0
ChIP seq	0
Gene set enrichment	0
Database	0
T-Map	0
Gene ontology analysis	0
Expectation Maximization	0
Variant Prioritization	0
Statistics	0
Clustering and alignment	0
De Bruijn graph	0
Database submission preparation	0
Pooled samples	0
Assembly editing	0
Variant Mapping	0
Integrated Solution	0
Gibbs motif sample	0
Assembly validation	0
MiRNA analysis (Ref and Ab-initio)	0
Segmentation	0
Programming Library	0
Data compression	0
Sequence variation analysis	0

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