Browse data: Bioinformatics application

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*NIX (1) · Cross-Platform (2) · Linux (44) · Linux 64 (5) · Mac OS X (26) · POSIX (2) · Requires Tomcat server (1) · UNIX (18) · Unix-like (2) · Windows (12) · all supporting JVM (2) · any (2) · browser based (2)

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; Analysis pipeline Annotation Bisulfite mapping Comparative genomics Correlation De novo mutation detection Differential Binding Differential expression analysis Formatting Gene expression analysis Hidden Markov Model Indel detection Integrated solution K-mer counting Mapping Methylation calling Modelling and simulation Peak calling Primer removal RNA-Seq analysis RRNA filtering Read mapping Read pre-processing SNP annotation SNP calling SNP detection Scaffolding Sequence alignment Sequence alignment analysis Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly validation Sequence assembly visualisation Sequence contamination filtering Sequence motif comparison Sequence motif discovery Sequence motif recognition Sequence trimming Sequencing quality control Standardisation and normalisation Statistical calculation Variant calling Variant prioritisation Visualisation

; Alternative splicing CLIP-Seq Cancer biology ChIP-on-chip ChIP-seq Chromatin Clone verification Community analysis Comparative genomics Copy number estimation DNA methylation DNA transcription Data handling De novo mutation detection Epigenetics Epigenomics Exome analysis Exome and whole genome variant detection Exome capture Gene expression analysis Gene regulation Gene structure Genetic variation Genetics Genomics Genotyping HITS-CLIP ICLIP Indel detection Mapping Metabolic reconstruction Metagenomics Mobile genetic elements Next Generation Sequencing PAR-CLIP Personalised medicine Phylogenetics Population genetics Quality control RNA RNA-Seq RNA-Seq alignment RNA-Seq quantification Rarefaction Read binning Regulatory RNA Resequencing SNP SNP detection Sequence alignment Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de novo assembly) Sequence functional annotation Sequence motifs Sequencing Structural variation Transcriptomics Whole genome resequencing