Browse data: Bioinformatics application

C (5) · C# (5) · C++ (22) · Flash (1) · Fortran (1) · Java (38) · Java 7 (1) · Perl (11) · Pilot Script (1) · Python (7) · R (15) · Smalltalk (1) · Tcl (1)

*NIX · 10 · 10.8 · 8 · AIX · All · Amazon EC2 · Compaq Alpha · Cross-Platform · GNU/Linux · IRIX · Linux · Linux 64 · Linux CentOS 6.5 · Linux Ubuntu 12.04 · Mac · Mac OS X · Mac OS X 10.7 · Mac OS X; x86 64 · Mac OS X; x86 64 · OS X · OSX · OpenBSD · POSIX · Requires Tomcat server · Solaris · UNIX · Unix · Unix-like · Web · Windows · Windows (Cygwin) · Windows 7 64-bit or Higher · Windows 7 or Higher · Windows XP · all supporting JVM · any · browser based · cloud · cross-platform · iOS · interoperable · or 10.9 · or 10.9 with Parallels Desktop · platform-independent · tested for Linux (Ubuntu) · Other · None

Maybe · No · Yes · Other · None

Apache License 2.0 (2) · Artistic-2.0 (2) · BSD (3) · BSD (3-clause) (1) · BSD License (1) · BioLicense (1) · Biopython License (MIT/BSD style) (1) · Commercial (22) · Custom Licence (8) · Free for academic use; Commercial (1) · Freeware (6) · GPL (7) · GPL 2.0+ (1) · GPL >=2 (1) · GPL-2 + file LICENSE (2) · GPL-3 (1) · GPLv2 (2) · GPLv3 (23) · LGPL (4) · LGPLv3 (1) · Mozilla Public License (1) · Open Source (1) · free for non-commercial academic research (1)

454 (46) · ABI SOLiD (28) · Affymetrix (1) · Agilent (1) · Any (10) · Complete Genomics (2) · Helicos (3) · Illumina (57) · Illumina HiSeq (6) · Illumina Solexa (6) · Ion Torrent (17) · Ion proton (1) · PacBio (6) · Pyrosequencing (QIAGEN) (1) · Roche NimbleGen (1) · Sanger (23)

; Ab-initio gene prediction Adapter removal Analysis Annotation Base-calling Biological interpretation Bisulfite mapping Chromatogram visualisation Classification Clustering Collapsing methods Comparative genomics Correlation DNA barcoding Data retrieval Differential Binding Differential binding sites Differential expression analysis File reformatting Formatting Functional enrichment Gene expression analysis Gene expression profiling Gene set testing Genome-wide association study Genome indexing (Burrows-Wheeler) Genome visualisation Gibbs sampling Heat map generation Integrated solution K-mer counting Local sequence alignment Localised reassembly Mapping Methylation calling MicroRNA detection Modelling and simulation Mutation detection Nucleic acid sequence feature detection Ontology comparison Peak calling Peptide mass fingerprint Phase pattern prediction Quality control RNA-Seq analysis Read alignment Read depth analysis Read mapping Read pre-processing SNP annotation SNP calling Scaffolding Sequence alignment Sequence alignment analysis Sequence alignment comparison Sequence alignment visualisation Sequence analysis Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly editing Sequence assembly validation Sequence assembly visualisation Sequence clustering Sequence contamination filtering Sequence error correction Sequence motif comparison Sequence motif discovery Sequence motif recognition Sequence parsing Sequence trimming Sequencing quality control Species frequency estimation Split-read mapping Standardisation and normalisation Statistical calculation Statistical testing Translated nucleotide search Variant calling Variant classification Variant prioritisation Viewer Visualisation Workflows

; Alternative splicing Cancer biology ChIP-exo ChIP-on-chip ChIP-seq Comparative genomics Copy number estimation DNA-Seq DNA methylation DNase-seq Data handling Epigenetics Epigenomics Exome analysis Exome and whole genome variant detection Exome capture Gene expression Gene expression analysis Gene structure Genetic variation Genetic variation analysis Genetics Genomic assembly Genomics Genotyping High-throughput sequencing Indel detection Laboratory information management Mapping MeDIP-Seq Metagenomics Methyl-Seq Microbial Surveillance Next Generation Sequencing Pathway or network analysis Personalised medicine Phylogenetics Population Genomics Population genetics Protein structure analysis Public health and epidemiology Quality control RNA RNA-Seq RNA-Seq alignment RNA-Seq quantification Read binning Regulatory RNA Resequencing SNP SNP detection Sequence alignment Sequence analysis Sequence assembly Sequence assembly (de novo assembly) Sequence motifs Sequencing Small RNA-Seq Statistical calculation Structural variation Transcriptomics Whole genome resequencing Workflows