Browse data: Bioinformatics application

Bash (1) · C (20) · C# (1) · C++ (32) · CGI (1) · Flash (1) · Java (39) · JavaScript (7) · Matlab (1) · MySQL (1) · PHP (5) · Perl (34) · Pilot Script (1) · Python (18) · R (13) · Ruby (3)

*NIX (1) · 10 (1) · 10.8 (2) · 8 (1) · Cross-Platform (7) · GNU/Linux (1) · Linux (67) · Linux 64 (14) · Linux CentOS 6.5 (1) · Linux Ubuntu 12.04 (1) · Mac OS X (53) · Mac OS X 10.7 (3) · Mac OS X; x86 64 (1) · OS X (1) · OpenBSD (1) · POSIX (5) · Requires Tomcat server (1) · Solaris (1) · UNIX (13) · Unix (1) · Unix-like (1) · Web (1) · Windows (38) · Windows (Cygwin) (2) · Windows 7 64-bit or Higher (2) · Windows 7 or Higher (1) · Windows XP (1) · all supporting JVM (1) · any (4) · browser based (2) · cloud (1) · cross-platform (1) · or 10.9 (2) · or 10.9 with Parallels Desktop (1) · platform-independent (4) · tested for Linux (Ubuntu) (1)

Maybe (30) · No (4) · Yes (132)

AGPL (2) · Apache License 2.0 (2) · Artistic License (2) · BCCA (academic use) (1) · BSD (6) · BSD (3-clause) (1) · BSD License (1) · BioLicense (1) · Boost (1) · CeCILL-C license (1) · Commercial (25) · Creative Commons - Attribution; Non-commercial 2.5 (1) · Freeware (10) · GPL (12) · GPL Boost (1) · GPL (>= 3) (1) · GPL-3 (1) · GPLv2 (7) · GPLv3 (30) · LGPL (4) · LGPL 2.1 (1) · MIT (6) · Mozilla Public License (2) · Open Source (4) · Unknown (1) · free for non-commercial academic research (1)

454 (41) · ABI SOLiD (28) · Affymetrix (3) · Agilent (1) · Any (20) · Any sequencing platform (1) · Complete Genomics (2) · Helicos (6) · Illumina (78) · Illumina HiSeq (9) · Illumina HiSeq X Ten (1) · Illumina HiSeq/NextSeq/MiSeq/Solexa (1) · Illumina Solexa (7) · Ion Torrent (18) · Ion proton (2) · NGS (1) · PacBio (7) · Pacific Biosciences (1) · Roche 454 (1) · Roche NimbleGen (2) · SOLiD (2) · Sanger (31)

; Ab-initio gene prediction Adapter removal Analysis Analysis pipeline Annotation Assembly Biological interpretation Bisulfite mapping Chromatogram visualisation Classification Clustering Collapsing methods Comparative genomics Conversion Correlation DNA barcoding Data retrieval De novo mutation detection Differential expression analysis Exome analysis File reformatting Formatting Functional analysis Functional enrichment Gene expression analysis Gene expression profiling Genome-wide association study Genome comparison Genome visualisation Genomics Global test Heat map generation Joint significance test Mapping Methylation analysis Methylation calling MiRNA analysis Modelling and simulation Mutation detection Omnibus test Ontology comparison PCR primer design Pathway or network analysis Peak calling Plotting and rendering Quality control RNA-Seq analysis RRNA filtering Read alignment Read depth analysis Read mapping Read pre-processing SNP annotation SNP calling SNP detection Scaffolding Sequence alignment Sequence alignment analysis Sequence alignment comparison Sequence alignment visualisation Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly validation Sequence assembly visualisation Sequence clustering Sequence contamination filtering Sequence error correction Sequence motif comparison Sequence motif discovery Sequence motif recognition Sequence parsing Sequence trimming Sequencing quality control Split-read mapping Standardisation and normalisation Statistical calculation Transcriptome assembly Variant calling Variant classification Variant prioritisation Visualisation Whole genome breakend assembly Workflows

Alternative splicing · Biomedical Sciences · CLIP-Seq · Cancer biology · ChIP-Seq · ChIP-exo · ChIP-on-chip · ChIP-seq · Chromatin · Clone verification · Community analysis · Comparative genomics · Copy number estimation · DNA · DNA-Seq · DNA methylation · DNA packaging · DNA transcription · DNase-seq · Data handling · De-novo assembly · De novo mutation detection · Epidemiology · Epigenetics · Epigenomics · Exome · Exome analysis · Exome and whole genome variant detection · Exome capture · Functional genomics · Gene expression · Gene expression analysis · Gene regulation · Gene structure · Genetic variation · Genetic variation analysis · Genetics · Genome Wide Association Studies · Genomic assembly · Genomics · Genotyping · HITS-CLIP · High-throughput sequencing · ICLIP · Immunoprecipitation experiment · In vitro selection · Indel detection · Laboratory information management · Machine learning · Mapping · MeDIP-Seq · Metabolic pathways · Metabolic reconstruction · Metagenomic sequencing · Metagenomics · Meth-Seq · Methyl-Seq · MicroRNA-Seq · Microbial Ecology · Microbial Surveillance · Microbiome · Mobile genetic elements · Next Generation Sequencing · PAR-CLIP · Pathway or network analysis · Personalised medicine · Phylogenetics · Population Genomics · Population genetics · Protein interactions · Protein structure analysis · Public health and epidemiology · Quality control · RNA · RNA-Seq · RNA-Seq alignment · RNA-Seq quantification · RNA splicing · Rarefaction · Read alignment · Read binning · Regulatory RNA · Regulatory genomics · Resequencing · SNP · SNP detection · SNPs · Sequence alignment · Sequence analysis · Sequence annotation · Sequence assembly · Sequence assembly (de-novo assembly) · Sequence assembly (de novo assembly) · Sequence functional annotation · Sequence motifs · Sequencing · Simulation experiment · Small RNA-Seq · Small RNA Sequencing · Statistical calculation · Storage · Structural variation · Transcription factors and regulatory sites · Transcriptome assembly · Transcriptomics · Viral genomics · Whole-genome sequencing · Whole genome resequencing · Workflows · Other · None