Browse data: Bioinformatics application

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Maybe (24) · No (5) · Yes (141)

AGPL (1) · Apache License 2.0 (4) · Artistic License (2) · Artistic-2.0 (3) · BCCA (academic use) (1) · BSD (4) · BSD License (1) · BioLicense (1) · Biopython License (MIT/BSD style) (1) · Boost (1) · CeCILL (5) · CeCILL-C license (1) · Commercial (19) · Creative Commons - Attribution; Non-commercial 2.5 (2) · EU-GPL (1) · Freeware (10) · GPL (18) · GPL (>= 3) (1) · GPL 2.0+ (1) · GPL-2 + file LICENSE (2) · GPLv2 (8) · GPLv3 (38) · LGPL (5) · LGPLv3 (1) · MIT (5) · Mozilla Public License (1) · Non-commercial (2) · Open Source (2)

454 (42) · ABI SOLiD (34) · Any (19) · Any sequencing platform (1) · Complete Genomics (2) · Helicos (2) · Illumina (84) · Illumina HiSeq (9) · Illumina Solexa (8) · Ion Torrent (17) · Ion proton (1) · NGS (1) · PacBio (4) · Pyrosequencing (QIAGEN) (1) · SOLiD (1) · Sanger (16)

; Ab-initio gene prediction Adapter removal Analysis Analysis pipeline Annotation Base-calling Biological interpretation Bisulfite mapping Classification Clustering Comparative genomics Conversion Correlation DNA barcoding Data retrieval De novo mutation detection Differential Binding Differential binding sites Differential expression analysis Expectation Maximisation File reformatting Formatting Functional enrichment Gene expression analysis Gene expression profiling Genome-wide association study Genome indexing (Burrows-Wheeler) Genome visualisation Graph reduction Heat map generation Hidden Markov Model Indel detection Integrated solution K-mer counting Laboratory information management Learning algorithm Local sequence alignment Localised reassembly Mapping Methylation calling Modelling and simulation Mutation detection Nucleic acid sequence feature detection Ontology comparison Peak calling Peptide mass fingerprint Plotting and rendering Quality assessement Quality control RNA-Seq analysis Read mapping Read pre-processing Read summarisation SNP annotation SNP calling SNP detection Scaffolding Sequence alignment Sequence alignment analysis Sequence alignment comparison Sequence alignment visualisation Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly validation Sequence assembly visualisation Sequence clustering Sequence contamination filtering Sequence error correction Sequence motif comparison Sequence motif discovery Sequence motif recognition Sequence parsing Sequence redundancy removal Sequence trimming Sequencing quality control Signal Split-read mapping Standardisation and normalisation Statistical calculation Transcriptome assembly Variant calling Variant prioritisation Viewer Visualisation Workflows

; Alternative splicing Cancer biology ChIP-exo ChIP-on-chip ChIP-seq Community analysis Comparative genomics Copy number estimation DNA DNA-Seq DNA methylation DNase-seq Data handling De-novo assembly De novo mutation detection Epigenetics Epigenomics Exome analysis Exome and whole genome variant detection Exome capture Gene expression Gene expression analysis Gene regulation Gene structure Genetic variation Genetic variation analysis Genetics Genomic assembly Genomics Genotyping High-throughput sequencing Indel detection Laboratory information management Mapping MeDIP-Seq Metagenomics Methyl-Seq Microbial Surveillance Next Generation Sequencing Pathway or network analysis Personalised medicine Phylogenetics Population Genomics Population genetics Protein structure analysis Public health and epidemiology Quality control RNA RNA-Seq RNA-Seq alignment RNA-Seq quantification Rarefaction Regulatory RNA Regulatory genomics SNP SNP detection Sequence alignment Sequence analysis Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly (de novo assembly) Sequence motifs Sequencing Small RNA-Seq Statistical calculation Storage Structural variation Transcriptomics Whole genome resequencing