Browse data: Bioinformatics application

Bash (2) · C (30) · C# (2) · C++ (27) · CGI (2) · Flash (1) · Fortran (1) · GO (1) · Haskell (2) · Java (36) · Java 7 (1) · JavaScript (4) · MySQL (1) · PHP (2) · Perl (28) · Pilot Script (1) · Python (18) · R (21) · Ruby (1) · Tcl (1) · f (1)

*NIX (1) · 10 (1) · 10.8 (1) · 8 (1) · Cross-Platform (3) · GNU/Linux (1) · Linux (66) · Linux 64 (16) · Mac (1) · Mac OS X (64) · Mac OS X 10.7 (2) · Mac OS X; x86 64 (1) · OS X (1) · OSX (1) · POSIX (7) · Solaris (2) · UNIX (30) · Unix (2) · Unix-like (2) · Web (1) · Windows (53) · Windows 7 64-bit or Higher (1) · Windows 7 or Higher (1) · Windows XP (1) · all supporting JVM (2) · any (5) · browser based (2) · interoperable (1) · or 10.9 (1) · or 10.9 with Parallels Desktop (1) · platform-independent (5)

Maybe (30) · No (4) · Yes (142)

AGPL (2) · Apache License 2.0 (2) · Artistic License (1) · Artistic-2.0 (3) · BSD (4) · BSD (3-clause) (1) · Boost (2) · CeCILL (3) · CeCILL-C license (1) · Commercial (28) · Creative Commons - Attribution; Non-commercial 2.5 (1) · Custom Licence (8) · EU-GPL (1) · Freeware (11) · GPL (19) · GPL (>= 3) (1) · GPL >=2 (1) · GPL-2 + file LICENSE (2) · GPLv2 (3) · GPLv3 (35) · LGPL (2) · LGPLv3 (1) · MIT (3) · Mozilla Public License (1) · Open Source (2) · Unknown (1) · free for non-commercial academic research (2)

454 · ABI SOLiD · Affymetrix · Agilent · All · Any · Any HTS · Any sequencing platform · Anything that can be assembled with Celera or Newbler · Complete Genomics · GenePix · Helicos · Illumina · Illumina HiSeq · Illumina HiSeq X Ten · Illumina HiSeq/NextSeq/MiSeq/Solexa · Illumina Solexa · Ion Torrent · Ion proton · MiSeq · NGS · PacBio · Pacific Biosciences · Pyrosequencing (QIAGEN) · Roche · Roche 454 · Roche NimbleGen · SOLiD · Sanger · all · Other · None

; Ab-initio gene prediction Adapter removal Analysis Annotation Base-calling Biological interpretation Bisulfite mapping Chromatogram visualisation Clustering Comparative genomics Conversion Correlation DNA barcoding Data retrieval Differential Binding Differential binding sites Differential expression analysis Exome analysis File reformatting Formatting Functional analysis Functional enrichment Gene expression analysis Gene expression profiling Genome indexing Genome indexing (Burrows-Wheeler) Genome visualisation Graph reduction Haplotype inference Heat map generation Hidden Markov Model K-mer counting Learning algorithm Local sequence alignment Localised reassembly Mapping Metabolic network modelling Methylation calling MicroRNA detection Modelling and simulation Mutation detection Nucleic acid sequence feature detection Ontology comparison PCR primer design Pathway or network analysis Peak calling Phase pattern prediction Plotting and rendering Primer removal Quality assessement Quality control RNA-Seq analysis RRNA filtering Read alignment Read depth analysis Read mapping Read pre-processing Read summarisation SNP annotation SNP calling SNP detection Scaffolding Sequence alignment Sequence alignment analysis Sequence alignment comparison Sequence alignment visualisation Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly editing Sequence assembly validation Sequence assembly visualisation Sequence contamination filtering Sequence error correction Sequence functional annotation Sequence motif comparison Sequence motif discovery Sequence motif recognition Sequence parsing Sequence trimming Sequencing quality control Signal Species frequency estimation Standardisation and normalisation Statistical calculation Transcriptome assembly Translated nucleotide search Variant calling Variant classification Variant prioritisation Viewer Visualisation Workflows

; Alternative splicing Biomedical Sciences ChIP-exo ChIP-on-chip ChIP-seq Clone verification Community analysis Comparative genomics Copy number estimation DNA-Seq DNA methylation DNA packaging DNA transcription DNase-seq Data handling Epigenetics Epigenomics Exome Exome analysis Exome and whole genome variant detection Exome capture Functional genomics Gene expression Gene expression analysis Gene regulation Gene structure Genetic variation Genetic variation analysis Genetics Genome Wide Association Studies Genomics Genotyping Indel detection Laboratory information management Mapping MeDIP-Seq Metabolic pathways Metabolic reconstruction Metagenomics Methyl-Seq Microbial Surveillance Next Generation Sequencing Pathway or network analysis Personalised medicine Phylogenetics Population Genomics Population genetics Protein interactions Protein structure analysis Quality control RNA RNA-Seq RNA-Seq alignment RNA-Seq quantification RNA splicing Rarefaction Read binning Regulatory RNA Regulatory genomics Resequencing SNP SNP detection SNPs Sequence alignment Sequence analysis Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly (de novo assembly) Sequencing Small RNA-Seq Storage Structural variation Transcription factors and regulatory sites Transcriptome assembly Transcriptomics Viral genomics Whole genome resequencing Workflows