Browse data: Bioinformatics application

Bash · Bourne shell · C · C# · C++ · CGI · CUDA · Cython · D · Flash · Fortran · Fortran F77 · GO · Haskell · Java · Java 7 · JavaScript · Matlab · MySQL · OCaml · PHP · Perl · Pilot Script · Python · Qt · R · Ruby · Smalltalk · Tcl · f · Other · None

*NIX (2) · AIX (1) · All (1) · Cross-Platform (4) · GNU/Linux (3) · IRIX (1) · Linux (63) · Linux 64 (12) · Mac OS X (56) · Mac OS X; x86 64 (3) · OSX (1) · OpenBSD (1) · POSIX (7) · Solaris (3) · UNIX (32) · Unix (1) · Unix-like (6) · Windows (25) · Windows (Cygwin) (3) · all supporting JVM (1) · any (3) · cross-platform (1) · platform-independent (3) · tested for Linux (Ubuntu) (1)

Maybe (58) · No (11) · Yes (141)

Apache License 2.0 (1) · Artistic License (1) · Artistic-2.0 (3) · BCCA (academic use) (1) · BSD (10) · BSD (3-clause) (1) · Biopython License (MIT/BSD style) (1) · CeCILL (2) · Commercial (12) · Creative Commons - Attribution; Non-commercial 2.5 (2) · EU-GPL (1) · Freeware (11) · GPL (15) · GPL (>= 3) (2) · GPL 2.0+ (1) · GPL >=2 (1) · GPL-2 + file LICENSE (2) · GPL-3 (2) · GPLv2 (6) · GPLv3 (35) · LGPL (4) · LGPLv3 (1) · MIT (15) · Non-commercial (2) · Open Source (2) · free for non-commercial academic research (1)

454 (43) · ABI SOLiD (27) · Any (17) · Any sequencing platform (1) · Complete Genomics (1) · Helicos (2) · Illumina (83) · Illumina HiSeq (11) · Illumina HiSeq/NextSeq/MiSeq/Solexa (1) · Illumina Solexa (8) · Ion Torrent (17) · Ion proton (1) · NGS (2) · PacBio (6) · SOLiD (2) · Sanger (11) · all (1)

; Adapter removal Analysis Annotation Base-calling Biological interpretation Bisulfite mapping Comparative genomics Conversion Correlation DNA barcoding Data retrieval Differential Binding Differential binding sites Differential expression analysis Differentially expressed gene identification Enrichment File reformatting Filtering Formatting Functional analysis Functional enrichment Gene expression analysis Gene set testing Genetic variation analysis Genome comparison Genome indexing Genome visualisation Genomic region matching Genotyping Gibbs sampling Global test Heat map generation Integrated solution Joint significance test K-mer counting Localised reassembly Mapping Methylation analysis Methylation calling Modelling and simulation Nucleic acid sequence feature detection Omnibus test Pathway or network analysis Peak calling Quality assessement Quality control RNA-Seq analysis RRNA filtering Read alignment Read depth analysis Read mapping Read pre-processing Read summarisation Repeat sequence organisation analysis SNP annotation Sample Barcoding Sequence alignment Sequence alignment analysis Sequence analysis Sequence annotation Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly validation Sequence assembly visualisation Sequence contamination filtering Sequence error correction Sequence motif comparison Sequence motif discovery Sequence motif recognition Sequence parsing Sequence redundancy removal Sequence trimming Sequencing quality control Signal Standardisation and normalisation Statistical calculation Statistical testing Variant calling Viewer Visualisation Workflows

; Alternative splicing Biomedical Sciences CLIP-Seq Cancer biology ChIP-Seq ChIP-exo ChIP-on-chip ChIP-seq Chromatin Comparative genomics Copy number estimation DNA DNA-Seq DNA methylation DNA packaging DNA transcription DNase-seq Data handling De-novo assembly Epigenetics Epigenomics Exome analysis Exome and whole genome variant detection Exome capture Functional genomics Gene expression Gene expression analysis Gene regulation Gene structure Genomics Genotyping HITS-CLIP ICLIP Immunoprecipitation experiment Indel detection Laboratory information management Mapping MeDIP-Seq Metabolic reconstruction Metagenomics Meth-Seq Methyl-Seq MicroRNA-Seq Next Generation Sequencing PAR-CLIP Pathway or network analysis Personalised medicine Phylogenetics Population genetics Protein structure analysis Quality control RNA RNA-Seq RNA-Seq alignment RNA-Seq quantification Read alignment Regulatory RNA Regulatory genomics Resequencing SNP SNP detection Sequence analysis Sequence assembly Sequence assembly (de-novo assembly) Sequence assembly (de novo assembly) Sequence motifs Sequencing Simulation experiment Small RNA-Seq Storage Structural variation Transcription factors and regulatory sites Transcriptome assembly Transcriptomics Whole genome resequencing Workflows