Software/queries
< Software
| Biological domain | |
|---|---|
| .NET BIO | Sequence analysis |
| 4peaks | Sequencing |
| A5 | Sequence assembly |
| AB Large Indel Tool | Indel detection Sequencing |
| AB Small Indel Tool | Indel detection Sequencing |
| ... further results | |
| Institute | |
|---|---|
| A5 | University of California Davis |
| AB Large Indel Tool | ABI |
| AB Small Indel Tool | ABI |
| ABBA | University of Maryland |
| ABMapper | The Chinese University of Hong Kong |
| ABySS | Canada's Michael Smith Genome Sciences Centre |
| Adapter Removal (software) | University of East Anglia |
| ADTEx | The University of Melbourne |
| AGE | Yale Univeristy |
| AGILE | Electrical Engineering & Computer Science Northwestern University |
| Alta-Cyclic | Cold Spring Harbor Laboratory |
| ANCHOR | Canada's Michael Smith Genome Sciences Centre |
| AnCorr | Engelhardt Institute of Molecular Biology RAS |
| Anno-J | The University of Western Australia |
| ANNOVAR | www.openbioinformatics.org |
| AREM | University of California Irvine |
| Array Suite (Array Studio/Server) | Omicsoft Corporation |
| ArrayExpressHTS | EBI |
| ArrayStar | http://www.dnastar.com |
| ATAC | Celera |
| Atlas Suite | Human Genome Sequencing Center (HGSC) at Baylor College of Medicine. |
| Atlas-SNP2 | Baylor College of Medicine Human Genome Sequencing Center |
| Avadis NGS | Strand Genomics Strand Life Sciences |
| Baa.pl | Sars International Centre for Marine Molecular Biology |
| Bambus | University of Maryland |
| BAMseek | Backyard deck. |
| BamTools | Boston College |
| BamView | The Wellcome Trust Sanger Institute |
| Barcode generator | U.C. Davis |
| BarraCUDA | University of Cambridge and University College London |
| Batman | Gurdon Institute |
| BayesCall | University of California Los Angeles |
| Bcbio-nextgen | Mass General Hospital Harvard Public School of Health Science for Life Laboratory Stockholm among other contributors |
| BEAP | Iowa State University |
| BEDTools | University of Virginia |
| BFAST | University of California Los Angeles |
| BFCounter | University of Chicago |
| BigBWA | Universidade de Santiago de Compostela |
| Bionimbus | University of Chicago |
| BioNumerics | Applied Maths NV |
| Biopieces | The University of Queensland Institute for Molecular Bioscience 4072 St. Lucia Brisbane Queensland Australia |
| Biopython | Biopython Project Open Bioinformatics Foundation |
| BioSmalltalk | BioSmalltalk Project Institute of Veterinary Genetics (IGEVET) CONICET Argentina |
| BiQ Analyzer | MPII UdS |
| BiQ Analyzer HT | UdS Epigenetics lab MPII |
| Bis-SNP | USC Epigenome Center |
| Bismark | The Babraham Institute Babraham Bioinformatics |
| Bison | German Center for Neurodegenerative Diseases (DZNE) |
| BLAST Ring Image Generator | The University of Queensland |
| Blixem | MRC Laboratory of Molecular Biology Wellcome Trust Sanger Institute |
| Bort | Institute of Molecular Genetics Biosafety Research and Consulting Johannes Gutenberg-University Mainz |
| Bowtie | University of Maryland Johns Hopkins University |
| Breakpointer | Max-Planck-Institute for Molecular Genetics |
| Breakway | UCLA Stanley F. Nelson Lab Department of Human Genetics Sourceforge |
| BSMAP | BCM |
| BSSim | Institute of Genomic Medicine Wenzhou Medical College Wenzhou 325035 China |
| Btrim | Yale University |
| BWA | Sanger Institute |
| BWA-SW | Sanger Institute |
| CABOG | The J. Craig Venter Institute |
| CASHX | Oregon State University |
| CATCH | CMBI Nijmegen Centre for Molecular Life Sciences |
| CatchAll | Cornell University |
| CEQer | University of Milano-Bicocca |
| CexoR | Wellcome Trust Sanger Institute |
| CGA Tools | Complete Genomics |
| CHiCAGO | Babraham Institute Cambridge |
| ChimeraScan | University of Michigan |
| ChIP-Seq (application) | EPFL Ecole Polytechnique Fédérale de Lausanne Lausanne |
| ChIPMunk | Engelhardt Institute of Molecular Biology RAS Vavilov Institute of General Genetics RAS |
| Chipster | CSC - IT Center for Science Finland |
| ChromHMM | Massachusetts Institute of Technology |
| Circos | Canada's Michael Smith Genome Sciences Centre |
| CisGenome | Johns Hopkins and Stanford |
| Cistrome | Harvard |
| CLCbio Genomics Workbench | http://www.clcbio.com |
| Clean reads | COMAV at Universidad Politecnica de Valencia |
| CleaveLand | Penn State |
| CLEVER | CWI Amsterdam |
| CloudAligner | Wayne State University |
| CloudBurst | University of Maryland |
| Cluster Flow | The Babraham Institute Science for Life Laboratory |
| CNANorm | University of Leeds |
| CNAseg | Cancer Research UK Cambridge Research Institute |
| CNB MetaGenomics tools | CNB/CSIC |
| CnD | Wellcome Trust Sanger Institute |
| CNVer | University of Toronto |
| CnvHMM | The Genome Institute at Washington University |
| CNVkit | University of California at San Francisco |
| CNVnator | Yale Univeristy |
| CompreheNGSive | University of Utah |
| Contra | Peter MacCallum Cancer Centre East Melbourne VIC 3002 Australia |
| Contrail | University of Maryland |
| CopySeq | Weizmann Institute of Science EMBL |
| Coral | University of Helsinki |
| CORAL (Contig Ordering Algorithm) | Canada's Michael Smith Genome Sciences Centre |
| Cortex | University of Oxford TGAC EBI |
| CRAC | Institut de Biologie Computationnelle Institut de recherche en biothérapie (INSERM) Laboratoire d'informatique fondamentale de Lille Laboratoire d'informatique de robotique et de microélectronique de Montpellier |
| CRAVAT | Johns Hopkins University |
| Crossbow | U Maryland |
| CUDA-EC | School of Computer Engineering Nanyang Technological University Singapore |
| Cufflinks | University of Maryland UC Berkeley Johns Hopkins University Harvard University |
| Curtain | European Bioinformatics Institute |
| Cutadapt | TU Dortmund Science for Life Laboratory |
| DCLIP | UT Southwestern Medical Center |
| DecGPU | Nanyang Technological University |
| DeconSeq | San Diego State University Sourceforge |
| DeepTools | deepTools is maintained by the Bioinformatics and Deep-Sequencing Unit at the Max Planck Institute of Immunobiology and Epigenetics. |
| DEGseq | Tsinghua University |
| DESeq | European Molecular Biology Laboratory |
| DIAL | Webb Miller lab |
| DiffBind | Cancer Research UK - Cambridge Institute University of Cambridge |
| Diffreps | The Mount Sinai School of Medicine |
| Dindel | Sanger Center |
| DiscoSnp | INRIA Rennes - Bretagne Atlantique GenScale team |
| DNA Baser | Heracle BioSoft SRL |
| DNA Chromatogram Explorer | Heracle BioSoft SRL |
| DNaseR | Wellcome Trust Sanger Institute |
| DNAzip | University of California Irvine |
| DSAP | Chang Gung Bioinformatics Center and others |
| DSGseq | Tsinghua University |
| Ea-utils | Expression Analysis Inc |
| EagleView | Boston College |
| EagleView genome viewer | Boston College |
| EaSeq | University of Copenhagen |
| Easyfig | The University of Queensland |
| ECHO | UC Berkeley |
| EDENA | Geneva University Hospitals University of Geneva |
| EdgeR | The Walter + Eliza Hall Institute Melbourne Australia |
| ELAND | Illumina |
| EMBF | Institute of Computing Technology Chinese Academy of Sciences |
| Epigenome | Broad Institute |
| EpiGRAPH | MPII |
| ERANGE | Caltech |
| ERGO Genome Analysis and Discovery System | Integrated Genomics (Igenbio Inc). |
| ERNE | University of Udine and IGA Institute of Applied Genomics |
| EULER | University of California San Diego |
| ExomeCopy | Max-Planck-Institute for Molecular Genetics |
| Exonerate | European Molecular Biology Laboratory |
| FACS | KTH - Royal Institute of Technology |
| Falcon | PacBio |
| FAST: Fast Analysis of Sequences Toolbox | University of California Merced |
| FastQ Screen | The Babraham Institute Babraham Bioinformatics |
| FastQC | The Babraham Institute |
| FastQValidator | University of Michigan |
| FDM | University of North Carolina at Chapel Hill |
| FeatureCounts | Australia The Walter and Eliza Hall Institute |
| Figaro | University of Maryland |
| Filter | University of East Anglia |
| FindPeaks 3.1 | BC Genome Sciences Centre |
| FindPeaks 4.0 (Vancouver Short Read Package) | BC Genome Sciences Centre Sourceforge |
| Flexbar | GitHub |
| FragGeneScan | Indiana University |
| FrameDP | INRA CNRS |
| Freebayes | Boston College |
| FusionAnalyser | University of Milano-Bicocca Milan Italy |
| FusionHunter | University of Illinois |
| FusionSeq | Yale University |
| Fuzzypath | Wellcome Trust Sanger Institute |
| G-SQZ | TGen |
| Gambit | The Marth Lab |
| GASSST | IRISA-Symbiose |
| GASV | Brown University |
| GEM | Massachusetts Institute of Technology (MIT) |
| GENALICE MAP | GENALICE B.V. |
| GENE-Counter | Oregon State University |
| Genedata Expressionist | Basel Switzerland |
| Geneious | Auckland New Zealand |
| GeneProf | University of Edinburgh |
| GeneTalk | Charité-Universitätsmedizin Berlin |
| Genomatix Mining Station (GMS) | www.genomatix.de |
| Genome Trax | BIOBASE GmBH |
| GenomeBrowse | Golden Helix Inc. |
| Genomedata | University of Washington |
| GenomeJack | Mitsubishi Space Software Co. Ltd. |
| GenomeMapper | Max Planck Institute |
| Genometa | Hannover Medical School and Hannover University of Applied Arts and Sciences |
| GenomeView | VIB Department of Plant Systems Biology Broad Institute of MIT and Harvard |
| GenomicTools | IBM Research |
| GenoMiner | Astrid Research Inc. |
| GenoREAD | Virginia Bioinformatics Institute Virginia Tech |
| GenoViewer | Astrid Research Inc. |
| GensearchNGS | Phenosystems SA |
| GenVision | http://www.dnastar.com |
| Geoseq | Mt. Sinai School of Medicine |
| GimmeMotifs | NCMLS Nijmegen the Netherlands |
| Gk arrays | LIRMM UMR 5506 CNRS and Université de Montpellier 2 CC 477 161 rue Ada 34095 Montpellier France. rivals@lirmm.fr. LITIS EA 4108 UMR 8022 CNRS and Université Lille 1 and INRIA Lille-Nord-Europe Bât. M3 - UFR IEEA 59655 Villeneuve d'Ascq Cedex France |
| GlobalSeq | VU University Medical Center |
| GMAP | Genentech |
| Gnumap | Brigham Young University |
| Goby framework | Weill Medical College Cornell University |
| Golden Helix | Golden Helix Inc. |
| Goseq | The Walter + Eliza Hall Institute |
| Gowinda | VetMedUni Vienna |
| GPS | Massachusetts Institute of Technology |
| GRIDSS | WEHI |
| GRS | Shanghai Jiao Tong University |
| GSNAP | Genentech |
| Hairpin Annotation | University of East Anglia |
| Haplowser | Yonsei University |
| HeliSphere | Helicos |
| HI | Sanger Institute |
| Hicup | The Babraham Institute |
| HINT | IZKF Research Group Computational Biology and Bioinformatics RWTH Aachen University Medical School. |
| HiPipe | Academia Sinica Taiwan ROC |
| HiTEC | University of Western Ontario |
| HTSeq | EMBL |
| IBD2 | Charité-Universitätsmedizin Berlin |
| Ibis | Max Planck Institute for Evolutionary Anthropology |
| ICORN | Sanger Institute |
| IDBA | Department of Computer Science The University of Hong Kong |
| IGV | Broad Institute |
| Illuminate | InVitae |
| IMAGE | Wellcome Trust Sanger Institute |
| Ingenuity Variant Analysis | Ingenuity Systems |
| Integrated Genome Browser | Genoviz Project |
| IOmics | Geschickten Biosciences |
| IQSeq | Yale University |
| ISAAC | Illumina |
| ISSAKE | Canada's Michael Smith Genome Sciences Centre |
| JBrowse | Holmes lab at UC Berkeley |
| Jellyfish | University of Maryland |
| KBASE | DOE |
| Kissnp | INRIA Rennes - Bretagne Atlantique Symbiose team IRISA-Symbiose |
| Kmergenie | Penn State University |
| Knime4Bio | UMR 915 Institut du Thorax Université of Nantes 44000 Nantes France |
| Krona | National Biodefense Analysis & Countermeasures Center |
| Lab7 | Lab7 Systems Inc. |
| Lasergene | http://www.dnastar.com |
| LAST | Computational Biology Research Center (CBRC) - AIST |
| LASTZ | Miller Lab at Penn State |
| LobSTR | Whitehead Institute for Biomedical Research |
| LOCAS | Universität Tubingen |
| LookSeq | Sanger Institute Wellcome Trust Sanger Institute The Wellcome Trust Sanger Institute |
| LSKB, Life Science Knowledge Bank | World Fusion Co. LTD |
| MACS | Dana-Farber Cancer Institute |
| MagicViewer | Institute of Genomic Medicine Wenzhou Medical College Wenzhou 325035 China |
| MapDamage | Centre for GeoGenetics |
| Mapsembler | IRISA-Symbiose INRIA Rennes - Bretagne Atlantique Symbiose team |
| MAQ | The Wellcome Trust Sanger Institute |
| MARGARITA | Sanger Center |
| Mason | Free University of Berlin |
| Mauve | University of Wisconsin-Madison University of Queensland University of California-Davis University of Technology Sydney |
| MAXIMUS | The Chinese University of Hong Kong |
| Megraft | University of Gothenburg |
| METAGENassist | University of Alberta |
| Metagenome@Kin | World Fusion Co. LTD. |
| Metaxa | University of Gothenburg |
| MethMarker | MPII |
| Methpipe | University of Southern California |
| MethylCoder | UC Berkeley |
| MetMap | University of California at Berkeley |
| MG-RAST | Argonne National Laboratory |
| MicroRazerS | Freie Universität Berlin |
| Minia | IRISA-Symbiose |
| MIP Scaffolder | University of Helsinki |
| MiRCat | University of East Anglia |
| MiRDeep | Max Delbrück Center Berlin-Buch |
| MiRNAkey | Tel Aviv University |
| MiRProf | University of East Anglia |
| MiRspring | Victor Chang Cardiac Research Institute |
| MirTools | Institute of Genomic Medicine Wenzhou Medical College Wenzhou 325035 China |
| MirTrios | Beijing Institutes of Life Science |
| Mlgt | University of Manchester |
| MochiView | University of California at San Francisco |
| MoDIL | University of Toronto |
| MOM | Virginia Commonwealth University |
| MOSAIK | The Marth Lab Department of Biology Boston College Massachusetts |
| MotifLab | Norwegian University of Science and Technology (NTNU) |
| MPscan | CNRS Université Montpellier (FR); Aalto University (FI) |
| MrBayes | University of California San Diego |
| MrCaNaVaR | University of Washington |
| MrFAST | University of Washington Simon Fraser University |
| MrsFAST | Simon Fraser University University of Washington |
| MU2A | Yale Univeristy |
| MultiPSQ | Robert Koch Institute Berlin Germany |
| MultiQC | Science for Life Laboratory |
| MUMmer | The Institute for Genomic Research (TIGR) and the Center for Bioinformatics and Computational Biology at the University of Maryland College Park. Now maintained at the Center for Computational Biology Johns Hopkins University |
| MuMRescueLite | RIKEN Yokohama Institute |
| Mutascope | University of California San Diego |
| MuTect | Broad Institute |
| Mzip | EBI |
| NarrowPeaks | Institute of Plant Genetics PAS |
| NCBI Genome Workbench | NCBI |
| Nephele | NIAID NIH |
| Nesoni | Victorian Bioinformatics Consortium |
| Newbler | 454 Life Sciences |
| Nexalign | RIKEN Yokohama Institute |
| NextGen Utility Scripts | NERC Environmental Bioinformatics Centre |
| NextGENe | SoftGenetics LLC |
| Ngs backbone | COMAV at Universidad Politecnica de Valencia |
| Ngs-pipeline | VIGG RAS |
| Ngs.plot | Icanh School of Medicine at Mount Sinai |
| NGSUtils | Indiana University |
| NovelSeq | Simon Fraser University University of Washington |
| Novocraft | Novocraft Technologies Sdn. Bhd. Kuala Lumpur Malaysia |
| NPS | Dana-Farber Cancer Institute |
| NucleR | Molecular Modelling & Bioinformatics Unit. Joint programme IRB-BSC & University of Barcelona |
| Oases | MPI EBI |
| Oasis | German Center for Neurodegenerative Diseases (DZNE) |
| ODIN | AICES RWTH Aachen University Clinic Aachen |
| OLego | Cold Spring Harbor Laboratory Rockefeller University |
| Omixon Variant Toolkit | Omixon |
| PacBio conversion tools | Pacific Biosciences |
| PaCGeE | Geschickten |
| PALMA | Max Planck Society |
| PALMapper | Friederich Miescher Laboratory of the Max Planck Society |
| PARalyzer | Duke University |
| Partek Genomics Suite | Partek |
| Patchwork | Science for Life Laboratory Department of Medical Sciences Uppsala University SE-751 85 Uppsala Sweden |
| PatMaN | Max Planck Institute |
| PeakAnalyzer | EMBL-EBI |
| PeakTrace | Nucleics |
| PECAN | European Bioinformatics Institute |
| PEMer | European Molecular Biology Laboratory |
| PERalign | University of Kentucky |
| PerM | University of Southern California |
| Phred | Genome Sciences Department University of Washington |
| Phymm | University of Maryland |
| PiCall | The Scripps Research Institute |
| Pindel | EBI |
| Pipeline Pilot | Accelrys |
| PoissonSeq | Jun Li |
| PoolHap | Greger Mendel Institute |
| Post Assembly Genome Improvement Toolkit | Sanger Institute |
| PRICE | University of California at San Francisco |
| PRINSEQ | San Diego State University Sourceforge |
| ProbeMatch | University of Wisconsin-Madison |
| ProbHD | McGill University |
| Pybedtools | National Institutes of Health |
| PyroBayes | The MarthLab |
| PyroMap | Standford University |
| QCALL | Sanger |
| Qpalma | Max Planck Society |
| QSeq | http://www.dnastar.com |
| QSRA | Oregon State University |
| QuadGT | DIRO & Sainte-Justine UHC Research Centre University of Montreal |
| Quake | University of Maryland |
| QUAST | Academic University St. Petersburg Russia |
| QuEST | Stanford University |
| Quip | University of Washington |
| RApiD | Max Planck Institute |
| RAPSearch | Indiana University |
| Ray | Université Laval Québec Canada |
| RazerS | Free University of Berlin |
| RDiff | Memorial Sloan-Kettering Cancer Center |
| Readaligner | University of Helsinki |
| REAL | University of Würzburg |
| Reaper | EMBL-EBI |
| Reconciliator | University of Maryland |
| RECOUNT | Computational Biology Research Center (CBRC) - AIST Tokyo JAPAN. |
| RefCov | University of Washington |
| Repitools | The Garvan Institute of Medical Research Sydney Australia The Walter and Eliza Hall Institute Melbourne Australia |
| Reptile | Iowa State University |
| RGA | Oregon State University |
| RiboPicker | San Diego State University Sourceforge |
| RNA | University of Udine and IGA Institute of Applied Genomics |
| RobiNA | Max Planck Institute of Molecular Plant Physiology |
| RSAT peak-motifs | Université Libre de Bruxelles Université de la Méditerrannée Max Planck Institute for Molecular Genetics Pasteur IBENS |
| RSEQtools | Yale University |
| Rsubread | Australia The Walter and Eliza Hall Institute |
| RTG | Real Time Genomics. |
| RUbioSeq | Bioinformatics Unit Spanish National Cancer Research Centre (CNIO) |
| S-MART | INRA Versailles |
| SAMMate | Sourceforge |
| Samscope | Keio University |
| SAMStat | Riken Japan |
| Savant Genome Browser | University of Toronto |
| Scaffolder | University of Akron |
| SCALCE | Simon Fraser University University of Washington |
| SCARF | University of British Columbia |
| Scripture | Broad Institute |
| SEAL | CRS4 |
| SEECER | Carnegie Mellon University |
| SEED | University of California Riverside |
| Segemehl | Professur für Bioinformatik Institut für Informatik Universität Leipzig |
| Segtor | Bioinformatics Unit Clinical Research Coordination Instituto Nacional de Cancer (INCA) Centro Rio de Janeiro Brazil |
| Seq2HLA | TRON - Translational Oncology at the University Medical Center of the Johannes Gutenberg
University Medical Center of the Johannes Gutenberg University Mainz Freiligrathstrasse 12 55131 Mainz |
| SeqAn | Free University of Berlin |
| SeqBuster | Centre of Genomic Regulation |
| SeqCons | Freie Universität Berlin |
| SeqGSEA | The University of Newcastle |
| SeqMan NGen | http://www.DNASTAR.com |
| SeqMINER | IGBMC (Strasbourg) |
| SeqMonk | The Babraham Institute |
| SeqPrep | University of California Santa Cruz |
| SeqSaw | Tsinghua University |
| SeqSeg | Broad Institute |
| SeqSite | Tsinghua University |
| SeqSolve | Integromics |
| SeqSphere+ | Ridom GmbH (Münster Germany) http://www.ridom.de |
| SeqTrim | Universidad de Málaga |
| Sequedex | Los Alamos National Lab |
| SequenceVariantAnalyzer | Duke University |
| SeqWare | University of California Los Angeles |
| SeqWords | The BioPerl Foundation |
| SESAME | INRA Montpellier |
| Sff2fastq | The Genome Center at Washington University St. Louis MO. |
| SGA | The Wellcome Trust Sanger Institute |
| SHARCGS | Max-Planck-Institute for Molecular Genetics |
| SHE-RA | Massachusetts Institute of Technology |
| Sherman | Babraham Bioinformatics The Babraham Institute |
| ShoRAH | ETH Zurich |
| Shore | Max Planck Institute |
| SHOREmap | MPI |
| SHORTY | Stony Brook University |
| SHRiMP | University of Toronto |
| Sibelia | Academic University Russia |
| SiLoCo | University of East Anglia |
| Sim4cc | University of Maryland |
| SimNext | Sun Yat-sen University |
| SimSeq | University of California Santa Cruz |
| Skewer | University of California Riverside CA 92521 USA |
| SlideSort | Computational Biology Research Center (CBRC) - AIST |
| Sniper | University of Pennsylvania |
| SNPsea | Harvard University |
| SNPSeeker | Washington University in St. Louis |
| SOAP | Beijing Genomics Institute |
| SOAPfusion | The University of Hong Kong |
| SOAPsnp | Beijing Genomics Institute |
| SOCS | Georgia Institute of Technology National Biodefense Analysis & Countermeasures Center |
| Solas | Max Planck Institute |
| Sole-Search | University of California-Davis |
| SolexaQA | Massey University Palmerston North New Zealand |
| SolexaTools | University of California Los Angeles |
| SOLID software tools | Community project |
| SomaticCall | Broad Institute |
| Spiral Genetics | http://www.spiralgenetics.com |
| SpliceMap | Stanford University |
| SpliceTrap | Cold Spring Harbor Laboratory |
| SplicingViewer | Institute of Genomic Medicine Wenzhou Medical College Wenzhou，China |
| SPLINTER | Washington University in St. Louis |
| SPP | Harvard Peter Park's lab |
| SRAdb | National Institutes of Health |
| SRMA | University of California Los Angeles |
| SSA | EPFL Ecole Polytechnique Fédérale de Lausanne Lausanne |
| SSAHA | The Wellcome Trust Sanger Institute |
| SsahaSNP | Wellcome Trust Sanger Institute |
| SSPACE | BaseClear BV (www.baseclear.com) |
| STADEN | MRC Laboratory of Molecular Biology Wellcome Trust Sanger Institute |
| Stampy | University of Oxford |
| STAR | CSHL |
| Strelka | Illumina |
| Subjunc | Australia The Walter and Eliza Hall Institute |
| Subread | Australia The Walter and Eliza Hall Institute |
| SUDS genome browser | University of Helsinki |
| SUTTA | New York University |
| SVMerge | The Wellcome Trust Sanger Institute |
| SWAP454 | Broad Institute |
| SwDMR | Institute of Genomic Medicine Wenzhou Medical College Wenzhou 325035 China |
| Swift | Sanger Institute |
| SWT | University of Washington |
| SXOligoSearch | Synamatix |
| Syapse | www.Syapse.com |
| Syzygy | Broad Institute |
| T-lex | Stanford University |
| Ta-si prediction | University of East Anglia |
| Tablet | Information and Computational Sciences The James Hutton Institute Dundee UK |
| TagCleaner | San Diego State University Sourceforge |
| TagDust | RIKEN Yokohama Institute |
| Tally | EMBL-EBI |
| Tallymer | University of Hamburg |
| TAPyR | INESC-ID/IST Lisbon Portugal |
| TASR | Canada's Michael Smith Genome Sciences Centre |
| TMAP | Ion Torrent |
| TopHat | University of Maryland Center for Bioinformatics and Computational Biology University of California Berkeley Department of Mathematics Johns Hopkins University Center for Computational Biology |
| TopHat-Fusion | University of Maryland |
| TOTALRECALLER | New York University |
| Tracembler | Iowa State University |
| Trinity | Broad Institute and the Hebrew University of Jerusalem |
| Tripal | Washington State University Clemson University Genomics Institute Generic Model Organism Database project |
| Tview | Wellcome Trust Sanger Institute |
| UGENE | Unipro Russia |
| V-Xtractor | University of British Columbia |
| VAAL | Broad Institute |
| VAAST | University of Utah Omicia Inc. |
| Variant Effect Predictor | EBI |
| VariantClassifier | JCVI |
| Variation toolkit | Université of Nantes |
| VariationHunter | Simon Fraser University University of Washington |
| VARiD | University of Toronto |
| VCAKE | University of Carolina-Chapel Hill |
| Vcflib | Boston College |
| Vectorfriends | Singapore |
| Velvet | European Bioinformatics Institute |
| VelvetOptimiser | Monash University |
| Vicuna | Broad Institute |
| VIP | Biobix - Ghent University |
| ViralFusionSeq | The Chinese University of Hong Kong |
| VirusSeq | The University of Texas MD Anderson Cancer Center |
| VisSR | University of East Anglia |
| Vmatch | University of Hamburg |
| WebApollo | Berkeley Bioinformatics Open-source Projects (BBOP) at Lawrence Berkeley National Lab; JBrowse project Holmes Lab UC Berkeley; Elsik Lab University of Missouri. |
| WHAM | University of Wisconsin-Madison |
| XMatchView | Canada's Michael Smith Genome Sciences Centre |
| YASS | LIFL Bioinfo / INRIA Lille-Nord Europe Sequoia group |
| ZINBA | The University of North Carolina at Chapel Hill |
| ZOOM | www.bioinfor.com |
| ZORRO | Laboratório de Genômica e Expressão - Universidade Estadual de Campinas |
